Detailed information of SNP:
|
SNP ID:
sf0427465601(Gbrowse)
Chromosome: chr04 Position: 27465601 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 84.91% | 15.09% |
| All Indica | 798 | 78.95% | 21.05% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 38.50% | 61.50% |
| Indica Intermediate | 210 | 82.86% | 17.14% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0427465601 | A->C | INTERGENIC | None |