Detailed information of SNP:
|
SNP ID:
sf0427499647(Gbrowse)
Chromosome: chr04 Position: 27499647 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1322 | 94.70% | 5.30% |
| All Indica | 710 | 90.56% | 9.44% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 62 | 96.77% | 3.23% |
| Indica I | 315 | 88.57% | 11.43% |
| Indica II | 202 | 92.08% | 7.92% |
| Indica Intermediate | 193 | 92.23% | 7.77% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0427499647 | C->T | LOC_Os04g46690(LOC_Os04g46690.1) | Synonymous |