Detailed information of SNP:
|
SNP ID:
sf0427545465(Gbrowse)
Chromosome: chr04 Position: 27545465 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 84.97% | 15.03% |
| All Indica | 797 | 79.80% | 20.20% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 40.09% | 59.91% |
| Indica Intermediate | 210 | 84.29% | 15.71% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0427545465 | C->A | LOC_Os04g46770(LOC_Os04g46770.1) | Non-Synonymous SNP |