Detailed information of SNP:
|
SNP ID:
sf0427560717(Gbrowse)
Chromosome: chr04 Position: 27560717 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 50.85% | 49.15% |
| All Indica | 797 | 82.69% | 17.31% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 373 | 80.43% | 19.57% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 77.73% | 22.27% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 31.71% | 68.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0427560717 | C->T | INTERGENIC | None |