Detailed information of SNP:
|
SNP ID:
sf0427603823(Gbrowse)
Chromosome: chr04 Position: 27603823 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 64.20% | 35.80% |
| All Indica | 799 | 93.99% | 6.01% |
| All Japonica | 497 | 16.10% | 83.90% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 21.19% | 78.81% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0427603823 | A->C | INTERGENIC | None |