Detailed information of SNP:
|
SNP ID:
sf0427638336(Gbrowse)
Chromosome: chr04 Position: 27638336 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 85.40% | 14.60% |
| All Indica | 798 | 78.95% | 21.05% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 40.38% | 59.62% |
| Indica Intermediate | 210 | 81.90% | 18.10% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0427638336 | G->A | INTERGENIC | None |