Detailed information of SNP:
|
SNP ID:
sf0427640709(Gbrowse)
Chromosome: chr04 Position: 27640709 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 73.84% | 26.16% |
| All Indica | 798 | 87.72% | 12.28% |
| All Japonica | 497 | 52.11% | 47.89% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 374 | 86.36% | 13.64% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 84.36% | 15.64% |
| Temperate Japonica | 335 | 37.61% | 62.39% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0427640709 | C->T | LOC_Os04g46930(LOC_Os04g46930.2) | Synonymous |
| sf0427640709 | C->T | LOC_Os04g46930(LOC_Os04g46930.1) | Synonymous |