Detailed information of SNP:
|
SNP ID:
sf0427673638(Gbrowse)
Chromosome: chr04 Position: 27673638 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 50.46% | 49.54% |
| All Indica | 798 | 17.67% | 82.33% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 374 | 18.98% | 81.02% |
| Indica II | 213 | 8.45% | 91.55% |
| Indica Intermediate | 211 | 24.64% | 75.36% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0427673638 | T->A | INTERGENIC | None |