Detailed information of SNP:
|
SNP ID:
sf0427673653(Gbrowse)
Chromosome: chr04 Position: 27673653 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 50.04% | 49.96% |
| All Indica | 796 | 82.54% | 17.46% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 373 | 81.23% | 18.77% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 210 | 75.24% | 24.76% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 36.59% | 63.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0427673653 | T->C | INTERGENIC | None |