Detailed information of SNP:
|
SNP ID:
sf0427676759(Gbrowse)
Chromosome: chr04 Position: 27676759 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 66.29% | 33.71% |
| All Indica | 793 | 41.36% | 58.64% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 25.54% | 74.46% |
| Indica II | 213 | 69.95% | 30.05% |
| Indica Intermediate | 208 | 40.38% | 59.62% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0427676759 | G->A | INTERGENIC | None |