Detailed information of SNP:
|
SNP ID:
sf0427682163(Gbrowse)
Chromosome: chr04 Position: 27682163 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 50.28% | 49.72% |
| All Indica | 798 | 17.92% | 82.08% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 49.25% | 50.75% |
| Indica I | 375 | 19.73% | 80.27% |
| Indica II | 212 | 8.02% | 91.98% |
| Indica Intermediate | 211 | 24.64% | 75.36% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0427682163 | T->C | INTERGENIC | None |