Detailed information of SNP:
|
SNP ID:
sf0427682282(Gbrowse)
Chromosome: chr04 Position: 27682282 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 50.14% | 49.86% |
| All Indica | 798 | 82.58% | 17.42% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 374 | 81.55% | 18.45% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 74.88% | 25.12% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 35.00% | 65.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0427682282 | T->C | INTERGENIC | None |