Detailed information of SNP:
|
SNP ID:
sf0427694823(Gbrowse)
Chromosome: chr04 Position: 27694823 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 88.92% | 11.08% |
| All Indica | 797 | 84.19% | 15.81% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 211 | 50.71% | 49.29% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0427694823 | G->A | INTERGENIC | None |