Detailed information of SNP:
|
SNP ID:
sf0427728883(Gbrowse)
Chromosome: chr04 Position: 27728883 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 52.44% | 47.56% |
| All Indica | 797 | 22.84% | 77.16% |
| All Japonica | 497 | 97.18% | 2.82% |
| Aus | 66 | 53.03% | 46.97% |
| Indica I | 374 | 22.19% | 77.81% |
| Indica II | 213 | 14.55% | 85.45% |
| Indica Intermediate | 210 | 32.38% | 67.62% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0427728883 | A->C | INTERGENIC | None |