Detailed information of SNP:
|
SNP ID:
sf0427750880(Gbrowse)
Chromosome: chr04 Position: 27750880 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 51.20% | 48.80% |
| All Indica | 798 | 84.21% | 15.79% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 374 | 83.16% | 16.84% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 77.25% | 22.75% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0427750880 | A->G | LOC_Os04g47059(LOC_Os04g47059.1) | INTRON |