Detailed information of SNP:
|
SNP ID:
sf0427782600(Gbrowse)
Chromosome: chr04 Position: 27782600 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1353 | 69.70% | 30.30% |
| All Indica | 736 | 45.65% | 54.35% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 355 | 44.51% | 55.49% |
| Indica II | 180 | 50.00% | 50.00% |
| Indica Intermediate | 201 | 43.78% | 56.22% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0427782600 | G->A | LOC_Os04g47100(LOC_Os04g47100.1) | Non-Synonymous SNP |