Detailed information of SNP:
|
SNP ID:
sf0427785079(Gbrowse)
Chromosome: chr04 Position: 27785079 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1345 | 84.61% | 15.39% |
| All Indica | 725 | 73.10% | 26.90% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 337 | 79.53% | 20.47% |
| Indica II | 203 | 56.65% | 43.35% |
| Indica Intermediate | 185 | 79.46% | 20.54% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0427785079 | C->T | LOC_Os04g47100(LOC_Os04g47100.1) | Non-Synonymous SNP |