Detailed information of SNP:
|
SNP ID:
sf0427811299(Gbrowse)
Chromosome: chr04 Position: 27811299 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 58.08% | 41.92% |
| All Indica | 798 | 95.86% | 4.14% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 93.33% | 6.67% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0427811299 | A->G | INTERGENIC | None |