Detailed information of SNP:
|
SNP ID:
sf0427825404(Gbrowse)
Chromosome: chr04 Position: 27825404 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 58.01% | 41.99% |
| All Indica | 798 | 95.86% | 4.14% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 49.25% | 50.75% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 210 | 93.81% | 6.19% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0427825404 | T->C | INTERGENIC | None |