Detailed information of SNP:
|
SNP ID:
sf0427839127(Gbrowse)
Chromosome: chr04 Position: 27839127 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 62.40% | 37.60% |
| All Indica | 795 | 37.61% | 62.39% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 9.60% | 90.40% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 207 | 35.27% | 64.73% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0427839127 | G->A | INTERGENIC | None |