Detailed information of SNP:
|
SNP ID:
sf0427840570(Gbrowse)
Chromosome: chr04 Position: 27840570 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 64.64% | 35.36% |
| All Indica | 797 | 41.53% | 58.47% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 66 | 59.09% | 40.91% |
| Indica I | 375 | 15.73% | 84.27% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 209 | 37.80% | 62.20% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0427840570 | C->T | INTERGENIC | None |