Detailed information of SNP:
|
SNP ID:
sf0427860309(Gbrowse)
Chromosome: chr04 Position: 27860309 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1148 | 51.74% | 48.26% |
| All Indica | 544 | 6.25% | 93.75% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 67 | 49.25% | 50.75% |
| Indica I | 355 | 3.66% | 96.34% |
| Indica II | 32 | 18.75% | 81.25% |
| Indica Intermediate | 157 | 9.55% | 90.45% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 27 | 70.37% | 29.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0427860309 | T->C | INTERGENIC | None |