Detailed information of SNP:
|
SNP ID:
sf0427878456(Gbrowse)
Chromosome: chr04 Position: 27878456 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 94.13% | 5.87% |
| All Indica | 777 | 89.70% | 10.30% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 194 | 64.43% | 35.57% |
| Indica Intermediate | 208 | 94.71% | 5.29% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0427878456 | A->T | LOC_Os04g47250(LOC_Os04g47250.1) | UTR_5_PRIME |