Detailed information of SNP:
|
SNP ID:
sf0427904712(Gbrowse)
Chromosome: chr04 Position: 27904712 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1212 | 50.17% | 49.83% |
| All Indica | 595 | 93.45% | 6.55% |
| All Japonica | 496 | 0.60% | 99.40% |
| Aus | 67 | 49.25% | 50.75% |
| Indica I | 241 | 92.95% | 7.05% |
| Indica II | 181 | 93.92% | 6.08% |
| Indica Intermediate | 173 | 93.64% | 6.36% |
| Temperate Japonica | 334 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 40.00% | 60.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0427904712 | C->T | INTERGENIC | None |