Detailed information of SNP:
|
SNP ID:
sf0427922399(Gbrowse)
Chromosome: chr04 Position: 27922399 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 84.45% | 15.55% |
| All Indica | 797 | 73.65% | 26.35% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 375 | 73.87% | 26.13% |
| Indica II | 212 | 91.98% | 8.02% |
| Indica Intermediate | 210 | 54.76% | 45.24% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0427922399 | G->A | LOC_Os04g47350(LOC_Os04g47350.1) | INTRON |