Detailed information of SNP:
|
SNP ID:
sf0427950576(Gbrowse)
Chromosome: chr04 Position: 27950576 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1392 | 66.45% | 33.55% |
| All Indica | 794 | 97.61% | 2.39% |
| All Japonica | 479 | 14.82% | 85.18% |
| Aus | 66 | 83.33% | 16.67% |
| Indica I | 373 | 98.39% | 1.61% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 208 | 96.15% | 3.85% |
| Temperate Japonica | 320 | 15.31% | 84.69% |
| Tropical Japonica | 93 | 21.51% | 78.49% |
| Japonica Intermediate | 66 | 3.03% | 96.97% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 61.54% | 38.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0427950576 | T->C | LOC_Os04g47410(LOC_Os04g47410.1) | INTRON |
| sf0427950576 | T->C | LOC_Os04g47410(LOC_Os04g47410.5) | INTRON |
| sf0427950576 | T->C | LOC_Os04g47410(LOC_Os04g47410.3) | INTRON |
| sf0427950576 | T->C | LOC_Os04g47410(LOC_Os04g47410.4) | INTRON |