Detailed information of SNP:
|
SNP ID:
sf0428016242(Gbrowse)
Chromosome: chr04 Position: 28016242 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 67.62% | 32.38% |
| All Indica | 798 | 97.62% | 2.38% |
| All Japonica | 487 | 16.02% | 83.98% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 374 | 98.93% | 1.07% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 325 | 17.54% | 82.46% |
| Tropical Japonica | 94 | 20.21% | 79.79% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 12 | 41.67% | 58.33% |
| Intermediate | 38 | 63.16% | 36.84% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0428016242 | T->C | LOC_Os04g47555(LOC_Os04g47555.1) | Non-Synonymous SNP |