Detailed information of SNP:
|
SNP ID:
sf0428102173(Gbrowse)
Chromosome: chr04 Position: 28102173 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 96.64% | 3.36% |
| All Indica | 792 | 98.36% | 1.64% |
| All Japonica | 492 | 96.14% | 3.86% |
| Aus | 60 | 75.00% | 25.00% |
| Indica I | 368 | 97.83% | 2.17% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 332 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 80.43% | 19.57% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0428102173 | C->T | INTERGENIC | None |