Detailed information of SNP:
|
SNP ID:
sf0428127823(Gbrowse)
Chromosome: chr04 Position: 28127823 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 57.80% | 42.20% |
| All Indica | 798 | 95.74% | 4.26% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 374 | 96.52% | 3.48% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0428127823 | A->G | INTERGENIC | None |