Detailed information of SNP:
|
SNP ID:
sf0428149346(Gbrowse)
Chromosome: chr04 Position: 28149346 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 57.51% | 42.49% |
| All Indica | 799 | 95.62% | 4.38% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0428149346 | T->C | INTERGENIC | None |