Detailed information of SNP:
|
SNP ID:
sf0428168429(Gbrowse)
Chromosome: chr04 Position: 28168429 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1372 | 66.40% | 33.60% |
| All Indica | 754 | 40.98% | 59.02% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 345 | 42.61% | 57.39% |
| Indica II | 205 | 19.51% | 80.49% |
| Indica Intermediate | 204 | 59.80% | 40.20% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0428168429 | C->T | INTERGENIC | None |