Detailed information of SNP:
|
SNP ID:
sf0428227886(Gbrowse)
Chromosome: chr04 Position: 28227886 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 56.06% | 43.94% |
| All Indica | 799 | 95.87% | 4.13% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0428227886 | T->A | LOC_Os04g47860(LOC_Os04g47860.5) | INTRON |
| sf0428227886 | T->A | LOC_Os04g47860(LOC_Os04g47860.3) | INTRON |
| sf0428227886 | T->A | LOC_Os04g47860(LOC_Os04g47860.1) | INTRON |
| sf0428227886 | T->A | LOC_Os04g47860(LOC_Os04g47860.2) | INTRON |
| sf0428227886 | T->A | LOC_Os04g47860(LOC_Os04g47860.4) | INTRON |
| sf0428227886 | T->A | LOC_Os04g47860(LOC_Os04g47860.6) | INTRON |