Detailed information of SNP:
|
SNP ID:
sf0428254276(Gbrowse)
Chromosome: chr04 Position: 28254276 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1363 | 94.50% | 5.50% |
| All Indica | 747 | 90.23% | 9.77% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 63 | 96.83% | 3.17% |
| Indica I | 350 | 88.57% | 11.43% |
| Indica II | 197 | 90.86% | 9.14% |
| Indica Intermediate | 200 | 92.50% | 7.50% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0428254276 | C->T | LOC_Os04g47870(LOC_Os04g47870.1) | INTRON |