Detailed information of SNP:
|
SNP ID:
sf0428261050(Gbrowse)
Chromosome: chr04 Position: 28261050 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1273 | 82.95% | 17.05% |
| All Indica | 788 | 98.60% | 1.40% |
| All Japonica | 369 | 51.22% | 48.78% |
| Aus | 63 | 92.06% | 7.94% |
| Indica I | 372 | 99.46% | 0.54% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 204 | 98.04% | 1.96% |
| Temperate Japonica | 237 | 67.93% | 32.07% |
| Tropical Japonica | 72 | 15.28% | 84.72% |
| Japonica Intermediate | 60 | 28.33% | 71.67% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 39 | 69.23% | 30.77% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0428261050 | G->A | INTERGENIC | None |