Detailed information of SNP:
|
SNP ID:
sf0428265007(Gbrowse)
Chromosome: chr04 Position: 28265007 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 93.01% | 6.99% |
| All Indica | 797 | 99.62% | 0.38% |
| All Japonica | 483 | 81.57% | 18.43% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 325 | 79.08% | 20.92% |
| Tropical Japonica | 90 | 94.44% | 5.56% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0428265007 | C->A | INTERGENIC | None |