Detailed information of SNP:
|
SNP ID:
sf0428266152(Gbrowse)
Chromosome: chr04 Position: 28266152 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 84.19% | 15.81% |
| All Indica | 798 | 73.31% | 26.69% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 375 | 71.73% | 28.27% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 210 | 54.76% | 45.24% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0428266152 | G->A | INTERGENIC | None |