Detailed information of SNP:
|
SNP ID:
sf0428270069(Gbrowse)
Chromosome: chr04 Position: 28270069 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 57.37% | 42.63% |
| All Indica | 799 | 96.37% | 3.63% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 66 | 39.39% | 60.61% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 39.02% | 60.98% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0428270069 | A->G | INTERGENIC | None |