Detailed information of SNP:
|
SNP ID:
sf0428273560(Gbrowse)
Chromosome: chr04 Position: 28273560 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 80.14% | 19.86% |
| All Indica | 795 | 68.68% | 31.32% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 56 | 55.36% | 44.64% |
| Indica I | 374 | 69.79% | 30.21% |
| Indica II | 211 | 85.31% | 14.69% |
| Indica Intermediate | 210 | 50.00% | 50.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 89.47% | 10.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0428273560 | G->A | INTERGENIC | None |