Detailed information of SNP:
|
SNP ID:
sf0428308982(Gbrowse)
Chromosome: chr04 Position: 28308982 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 96.54% | 3.46% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 495 | 91.92% | 8.08% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 333 | 98.20% | 1.80% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0428308982 | G->T | LOC_Os04g47912(LOC_Os04g47912.1) | UTR_5_PRIME |
| sf0428308982 | G->T | LOC_Os04g47912(LOC_Os04g47912.2) | UTR_5_PRIME |