Detailed information of SNP:
|
SNP ID:
sf0428321824(Gbrowse)
Chromosome: chr04 Position: 28321824 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 55.15% | 44.85% |
| All Indica | 792 | 92.55% | 7.45% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 204 | 89.71% | 10.29% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 35.90% | 64.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0428321824 | C->T | LOC_Os04g47940(LOC_Os04g47940.1) | Non-Synonymous SNP |