Detailed information of SNP:
|
SNP ID:
sf0428343827(Gbrowse)
Chromosome: chr04 Position: 28343827 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1375 | 96.36% | 3.64% |
| All Indica | 797 | 99.25% | 0.75% |
| All Japonica | 457 | 94.53% | 5.47% |
| Aus | 66 | 77.27% | 22.73% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 304 | 99.01% | 0.99% |
| Tropical Japonica | 89 | 76.40% | 23.60% |
| Japonica Intermediate | 64 | 98.44% | 1.56% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0428343827 | A->T | INTERGENIC | None |