Detailed information of SNP:



SNP ID: sf0428367552(Gbrowse)

Chromosome: chr04

Position: 28367552
Major allele: T

Minor allele: C

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1418 54.65% 45.35%
All Indica799 94.99% 5.01%
All Japonica497 0.20% 99.80%
Aus67 0.00% 100.00%
Indica I375 98.13% 1.87%
Indica II213 95.77% 4.23%
Indica Intermediate211 88.63% 11.37%
Temperate Japonica335 0.00% 100.00%
Tropical Japonica94 1.06% 98.94%
Japonica Intermediate68 0.00% 100.00%
Group VI/Aromatic14 0.00% 100.00%
Intermediate41 36.59% 63.41%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0428367552 C->T INTERGENIC None