Detailed information of SNP:
|
SNP ID:
sf0428530117(Gbrowse)
Chromosome: chr04 Position: 28530117 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 54.96% | 45.04% |
| All Indica | 799 | 94.49% | 5.51% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 58 | 5.17% | 94.83% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0428530117 | A->G | INTERGENIC | None |