Detailed information of SNP:
|
SNP ID:
sf0428576746(Gbrowse)
Chromosome: chr04 Position: 28576746 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1336 | 87.13% | 12.87% |
| All Indica | 797 | 99.75% | 0.25% |
| All Japonica | 422 | 61.61% | 38.39% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 270 | 46.30% | 53.70% |
| Tropical Japonica | 91 | 95.60% | 4.40% |
| Japonica Intermediate | 61 | 78.69% | 21.31% |
| Group VI/Aromatic | 13 | 69.23% | 30.77% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0428576746 | T->C | INTERGENIC | None |