Detailed information of SNP:
|
SNP ID:
sf0428663108(Gbrowse)
Chromosome: chr04 Position: 28663108 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1312 | 75.69% | 24.31% |
| All Indica | 696 | 54.60% | 45.40% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 309 | 32.69% | 67.31% |
| Indica II | 196 | 83.67% | 16.33% |
| Indica Intermediate | 191 | 60.21% | 39.79% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 94.74% | 5.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0428663108 | C->T | INTERGENIC | None |