Detailed information of SNP:
|
SNP ID:
sf0428674014(Gbrowse)
Chromosome: chr04 Position: 28674014 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 89.16% | 10.84% |
| All Indica | 796 | 82.91% | 17.09% |
| All Japonica | 493 | 98.17% | 1.83% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 211 | 51.18% | 48.82% |
| Indica Intermediate | 210 | 91.90% | 8.10% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 90 | 93.33% | 6.67% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0428674014 | C->T | INTERGENIC | None |