Detailed information of SNP:
|
SNP ID:
sf0428674588(Gbrowse)
Chromosome: chr04 Position: 28674588 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1308 | 90.44% | 9.56% |
| All Indica | 794 | 99.87% | 0.13% |
| All Japonica | 397 | 70.53% | 29.47% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 99.53% | 0.47% |
| Indica Intermediate | 208 | 100.00% | 0.00% |
| Temperate Japonica | 257 | 61.09% | 38.91% |
| Tropical Japonica | 81 | 95.06% | 4.94% |
| Japonica Intermediate | 59 | 77.97% | 22.03% |
| Group VI/Aromatic | 13 | 61.54% | 38.46% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0428674588 | C->T | INTERGENIC | None |