Detailed information of SNP:
|
SNP ID:
sf0428703224(Gbrowse)
Chromosome: chr04 Position: 28703224 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1357 | 94.25% | 5.75% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 437 | 82.61% | 17.39% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 281 | 73.31% | 26.69% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 64 | 98.44% | 1.56% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0428703224 | A->G | INTERGENIC | None |