Detailed information of SNP:
|
SNP ID:
sf0428732299(Gbrowse)
Chromosome: chr04 Position: 28732299 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1364 | 98.24% | 1.76% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 447 | 95.30% | 4.70% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 305 | 100.00% | 0.00% |
| Tropical Japonica | 76 | 73.68% | 26.32% |
| Japonica Intermediate | 66 | 98.48% | 1.52% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0428732299 | G->A | INTERGENIC | None |