Detailed information of SNP:
|
SNP ID:
sf0428766482(Gbrowse)
Chromosome: chr04 Position: 28766482 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 83.08% | 16.92% |
| All Indica | 796 | 94.60% | 5.40% |
| All Japonica | 491 | 69.25% | 30.75% |
| Aus | 66 | 57.58% | 42.42% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 212 | 92.92% | 7.08% |
| Indica Intermediate | 209 | 89.00% | 11.00% |
| Temperate Japonica | 332 | 77.41% | 22.59% |
| Tropical Japonica | 93 | 62.37% | 37.63% |
| Japonica Intermediate | 66 | 37.88% | 62.12% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0428766482 | G->A | LOC_Os04g48580(LOC_Os04g48580.1) | INTRON |